Dataiku's Python environment is using a version of the GNU C Library (glibc) that is too old.

Azamat
Azamat Registered Posts: 1

I can't import packages pyg-lib and torch-sparse for pytorch-geometric, because Dataiku's Python environment is using a version of the GNU C Library (glibc) that is too old. Both pyg-lib and torch-sparse depend on glibc version 2.29 or newer, but current system has an older version.
i got error while importing:

/opt/dataiku/code-env/lib/python3.11/site-packages/torch_geometric/typing.py:68: UserWarning: An issue occurred while importing 'pyg-lib'. Disabling its usage. Stacktrace: /lib64/libm.so.6: version `GLIBC_2.29' not found (required by /opt/dataiku/code-env/lib/python3.11/site-packages/libpyg.so)  warnings.warn(f"An issue occurred while importing 'pyg-lib'. 
"/opt/dataiku/code-env/lib/python3.11/site-packages/torch_geometric/typing.py:124: UserWarning: An issue occurred while importing 'torch-sparse'. Disabling its usage. Stacktrace: /lib64/libm.so.6: version `GLIBC_2.29' not found (required by /opt/dataiku/code-env/lib/python3.11/site-packages/libpyg.so)  warnings.warn(f"An issue occurred while importing 'torch-sparse'. "

Could you upgrade glibs library on linux machines?

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Answers

  • Turribeach
    Turribeach Dataiku DSS Core Designer, Neuron, Dataiku DSS Adv Designer, Registered, Neuron 2023 Posts: 2,160 Neuron

    This is a Linux issue not a Dataiku issue. What version and distribution of Linux are you running?

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