Sign up to take part
Registered users can ask their own questions, contribute to discussions, and be part of the Community!
Registered users can ask their own questions, contribute to discussions, and be part of the Community!
Hi
I want to install Bioconductor tximport R package in customized code env. But I am getting the below error.
Error: at least one package failed to install required versionIn addition: Warning message:package โtximportโ is not available (for R version 3.6.0) Execution halted
it seems the Bioconductor packages can be installed through Biocmanager and it is different from CRAN mirror.
When i try to install this package through notebook with the below commands,
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("tximport")
I am getting the below error
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.0 (2019-04-26) Installing package(s) 'BiocVersion', 'tximport' Warning message in install.packages(...): โ'lib = "/opt/dataiku/design-node/code-envs/R/test-R-env/R.lib"' is not writableโ
Can you help me to fix this issue either in notebook or in code env ?
First, I've never installed Bioconductor tximport in R.
However, I do have a question/idea. Are you working on a local copy of Dataiku say installed on a Macintosh computer rather than say a production Linux Server? If so, are you able to install Bioconductor tximport on your computer outside of Dataiku DSS in an R environment directly or through say RStudio?
In the past when working out an R or even Python library install problem with a Dataiku DSS code environment I would often find the answer when trying to install outside of a DSS Code environment.
This is not guaranteed to help. However, it may offer a way forward for your current situration.